indexing with bool deprecated?

pyproject.toml

@@ -1,10 +1,11 @@
 [project]
-name = "newplot"
+name = "vectise"
 version = "0.1.0"
-description = "Add your description here"
+description = "create vectorised plots"
 readme = "README.md"
 requires-python = ">=3.12"
 dependencies = [
     "numpy>=2.1.3",
+    "pyment>=0.3.3",
     "svg-py>=1.5.0",
 ]

src/vectise/colours.py

@@ -1,17 +1,33 @@
 from abc import ABC, abstractmethod
 import numpy as np
+from numpy.typing import ArrayLike
+
 # the following functions are taken from Ben Southgate:
 # https://bsouthga.dev/posts/colour-gradients-with-python
 
 
-def hex_to_RGB(hex):
-    """ "#FFFFFF" -> [255,255,255]"""
+def hex_to_RGB(hex_string: str):
+    """ "#FFFFFF" -> [255,255,255]
+
+    :param hex_string:
+    :type hex_string: str :
+    :param hex_string: str:
+
+
+    """
     # Pass 16 to the integer function for change of base
-    return [int(hex[i : i + 2], 16) for i in range(1, 6, 2)]
+    return [int(hex_string[i : i + 2], 16) for i in range(1, 6, 2)]
 
 
-def RGB_to_hex(RGB):
-    """[255,255,255] -> "#FFFFFF" """
+def RGB_to_hex(RGB: list[int]):
+    """[255,255,255] -> "#FFFFFF"
+
+    :param RGB:
+    :type RGB: list[int] :
+    :param RGB: list[int]:
+
+
+    """
     # Components need to be integers for hex to make sense
     RGB = [int(x) for x in RGB]
     return "#" + "".join(
@@ -19,10 +35,17 @@ def RGB_to_hex(RGB):
     )
 
 
-def colour_dict(gradient):
+def colour_dict(gradient: dict):
     """Takes in a list of RGB sub-lists and returns dictionary of
     colours in RGB and hex form for use in a graphing function
-    defined later on."""
+    defined later on.
+
+    :param gradient:
+    :type gradient: dict :
+    :param gradient: dict:
+
+
+    """
     return {
         "hex": [RGB_to_hex(RGB) for RGB in gradient],
         "r": [RGB[0] for RGB in gradient],
@@ -31,11 +54,24 @@ def colour_dict(gradient):
     }
 
 
-def linear_gradient(start_hex, finish_hex="#FFFFFF", n=10):
+def linear_gradient(start_hex: str, finish_hex: str = "#FFFFFF", n: int = 10):
     """returns a gradient list of (n) colours between
     two hex colours. start_hex and finish_hex
     should be the full six-digit colour string,
-    inlcuding the number sign ("#FFFFFF")"""
+    inlcuding the number sign ("#FFFFFF")
+
+    :param start_hex:
+    :type start_hex: str :
+    :param finish_hex: (Default value = "#FFFFFF")
+    :type finish_hex: str :
+    :param n: (Default value = 10)
+    :type n: int :
+    :param start_hex: str:
+    :param finish_hex: str:  (Default value = "#FFFFFF")
+    :param n: int:  (Default value = 10)
+
+
+    """
     # Starting and ending colours in RGB form
     s = hex_to_RGB(start_hex)
     f = hex_to_RGB(finish_hex)
@@ -53,10 +89,20 @@ def linear_gradient(start_hex, finish_hex="#FFFFFF", n=10):
     return colour_dict(RGB_list)
 
 
-def polylinear_gradient(colours, n):
+def polylinear_gradient(colours: list[str], n: int):
     """returns a list of colours forming linear gradients between
     all sequential pairs of colours. "n" specifies the total
-    number of desired output colours"""
+    number of desired output colours
+
+    :param colours:
+    :type colours: list[str] :
+    :param n:
+    :type n: int :
+    :param colours: list[str]:
+    :param n: int:
+
+
+    """
     # The number of colours per individual linear gradient
     n_out = int(float(n) / (len(colours) - 1))
     # returns dictionary defined by colour_dict()
@@ -73,16 +119,21 @@ def polylinear_gradient(colours, n):
 
 
 class ColourMap(ABC):
+    """ """
+
     @abstractmethod
     def __call__(self, v: float): ...
 
 
 class LinearGradientColourMap(ColourMap):
+    """ """
+
     def __init__(
         self,
         colours: list[str] | None = ["#ff0000", "#ffffff", "#0000ff"],
-        min_value: float | None = 0,
-        max_value: float | None = 1,
+        min_value: float = 0,
+        max_value: float = 1,
+        matrix: ArrayLike | None = None,
         bins: int = 100,
     ):
         self.colours = polylinear_gradient(colours, bins)
@@ -96,8 +147,29 @@ class LinearGradientColourMap(ColourMap):
 
 
 class RandomColourMap(ColourMap):
-    def __init__(self, random_state: int | list[int] | None = [2, 3, 4, 5, 6]):
+    """ """
+
+    def __init__(self, random_state: int | list[int] | None = None):
         self.rgen = np.random.default_rng(random_state)
 
     def __call__(self, v: float):
         return RGB_to_hex([x * 255 for x in self.rgen.random(3)])
+
+
+class BinaryColourMap(ColourMap):
+    def __init__(self, colours: list[str]):
+        self.colours = colours
+
+    def __call__(self, v: float):
+        return self.colours[np.isclose(v, 0).astype(int)]
+
+
+class RandomChoiceColourMap(ColourMap):
+    """ """
+
+    def __init__(self, colours: list[str], random_state: int | list[int] | None = None):
+        self.colours = colours
+        self.rgen = np.random.default_rng(random_state)
+
+    def __call__(self, v: float):
+        return self.colours[int(self.rgen.random() * len(self.colours) - 1)]

src/vectise/matrix.py

@@ -1,13 +1,14 @@
 import numpy as np
+from numpy.typing import ArrayLike
 import svg
-from colours import ColourMap
+from .colours import ColourMap
 
 
 class MatrixVisualisation:
     def __init__(
         self,
-        matrix: np.typing.NDArray,
         cmap: ColourMap,
+        matrix: ArrayLike,
         text: bool = False,
         labels: int | list[str] | bool = False,
     ):
@@ -43,12 +44,12 @@ class MatrixVisualisation:
                 if text:
                     self.elements.append(
                         svg.Text(
-                            x=x + width / 5,
+                            x=x + width / 3,
                             y=y + 3 * height / 4,
-                            textLength=width / 2,
-                            lengthAdjust="spacingAndGlyphs",
+                            # textLength=width / 2,
+                            # lengthAdjust="spacingAndGlyphs",
                             class_=["mono"],
-                            text=f"{self.matrix[i, j]:.02f}",
+                            text=f"{int(self.matrix[i, j])}",
                         )
                     )
 
@@ -60,7 +61,7 @@ class MatrixVisualisation:
         width: int = 20,
         resolution: int = 256,
         border: int | bool = 1,
-        labels: int | list[str] | bool = False,
+        labels: int | list[str | int] | bool = False,
     ):
         if height is None:
             height = int(self.total_height * 2 / 3)

src/vectise/neural_net.py

@@ -0,0 +1,150 @@
+import svg
+import logging
+
+import itertools
+import numpy as np
+from numpy.typing import ArrayLike
+
+
+class NeuralNet:
+    def __init__(
+        self,
+        matrix: ArrayLike | list[ArrayLike] | None = None,
+        shape: tuple[int] | None = None,
+        node_colour: str = "blue",
+        node_border: str = "black",
+        edge_colours: list[str] = ["green"],
+    ):
+        """Initialise the visualisation object.
+
+        Parameters
+        ----------
+        matrix : ArrayLike | None
+            matrix or list of matrices
+        shape : tuple[int] | None
+            shape
+        """
+        if matrix is None and shape is None:
+            logging.error("supply a matrix or at least its shape!")
+        elif matrix is None:
+            self.matrix = [
+                np.ones((shape[i], shape[i + 1])) for i in range(len(shape) - 1)
+            ]
+            self.shape = shape
+        elif shape is None:
+            if not isinstance(matrix, list):
+                self.matrix = [matrix]
+            else:
+                self.matrix = matrix
+            shapes = []
+            for m in self.matrix:
+                shapes.extend(m.shape)
+            self.shape = tuple(shapes[:-1:2] + [shapes[-1]])
+        else:
+            logging.error(
+                "not implemented. best to drop the shapes. they will"
+                "get inferred from the matrices."
+            )
+        if len(edge_colours) != len(self.matrix):
+            edge_colours = edge_colours * len(self.matrix)
+
+        self.elms: list[svg.Element] = []
+        self.r = 12
+        self.d_y = 32
+        self.d_x = 200
+        self.max_card = max(self.shape)
+        self.max_height = (self.max_card - 1) * self.d_y + 2 * self.d_y
+
+        node_elms = []
+        underlying_rectangles: list[svg.Element] = []
+        node_coords = []
+        for i_layer, card in enumerate(self.shape):
+            node_coord = []
+            offset = abs(self.max_card - card) / 2 * self.d_y
+            underlying_rectangles.append(
+                svg.Rect(
+                    x=self.d_y - 3 / 2 * self.r + i_layer * self.d_x,
+                    y=offset + self.d_y - 3 / 2 * self.r,
+                    width=3 * self.r,
+                    height=(card - 1) * self.d_y + 3 * self.r,
+                    rx=self.r,
+                    fill="lightgrey",
+                )
+            )
+            for i in range(card):
+                node_elms.append(
+                    svg.Circle(
+                        cx=self.d_y + i_layer * self.d_x,
+                        cy=offset + self.d_y + self.d_y * i,
+                        r=self.r,
+                        stroke=node_border,
+                        fill=node_colour,
+                        stroke_width=1,
+                    )
+                )
+                node_coord.append(
+                    (self.d_y + i_layer * self.d_x, offset + self.d_y + self.d_y * i)
+                )
+            node_coords.append(node_coord)
+
+        arrowhead = svg.Defs(
+            elements=[
+                svg.Marker(
+                    id="arrowhead",
+                    elements=[
+                        svg.Path(
+                            d=[svg.M(0, 0), svg.L(10, 5), svg.L(0, 10), svg.Z()],
+                            fill="green",
+                        )
+                    ],
+                    markerWidth=6,
+                    markerHeight=6,
+                    orient="auto-start-reverse",
+                    refX=8,
+                    refY=5,
+                    viewBox=svg.ViewBoxSpec(0, 0, 10, 10),
+                )
+            ]
+        )
+
+        edges = []
+        for i_layer in range(len(node_coords) - 1):
+            for (i, p1), (j, p2) in itertools.product(
+                enumerate(node_coords[i_layer]), enumerate(node_coords[i_layer + 1])
+            ):
+                if (self.matrix[i_layer][i, j] == 0).all():
+                    continue
+                edges.append(
+                    svg.Path(
+                        d=[
+                            svg.M(p1[0] + self.r, p1[1]),
+                            svg.L(p2[0] - self.r, p2[1]),
+                        ],
+                        stroke=edge_colours[i_layer],
+                        # marker_end="url(#arrowhead)",
+                    )
+                )
+
+        self.elms.append(arrowhead)
+        self.elms.append(svg.Style(text=".mono {font: monospace; text-align: center;}"))
+        self.elms.append(svg.Style(text=".small {font-size: 25%;}"))
+        self.elms.append(svg.Style(text=".normal {font-size: 12px;}"))
+
+        self.elms.extend(underlying_rectangles)
+        self.elms.extend(edges)
+        self.elms.extend(node_elms)
+
+    @property
+    def svg(self):
+        return str(
+            svg.SVG(
+                width=(len(self.shape) - 1) * self.d_x + 2 * self.d_y,
+                height=self.max_height,
+                elements=self.elms,
+            )
+        )
+
+    def __repr__(self):
+        return f"""Neural Net Visualisation: 
+    shape: {self.shape}
+            """

uv.lock

@@ -1,21 +1,6 @@
 version = 1
 requires-python = ">=3.12"
 
-[[package]]
-name = "newplot"
-version = "0.1.0"
-source = { virtual = "." }
-dependencies = [
-    { name = "numpy" },
-    { name = "svg-py" },
-]
-
-[package.metadata]
-requires-dist = [
-    { name = "numpy", specifier = ">=2.1.3" },
-    { name = "svg-py", specifier = ">=1.5.0" },
-]
-
 [[package]]
 name = "numpy"
 version = "2.1.3"
@@ -54,6 +39,15 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/86/09/a5ab407bd7f5f5599e6a9261f964ace03a73e7c6928de906981c31c38082/numpy-2.1.3-cp313-cp313t-win_amd64.whl", hash = "sha256:2564fbdf2b99b3f815f2107c1bbc93e2de8ee655a69c261363a1172a79a257d4", size = 12644098 },
 ]
 
+[[package]]
+name = "pyment"
+version = "0.3.3"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/dd/9e/c58a151c7020f6fdd48eea0085a9d1c91a57da19fa4e7bff0daf930c9900/Pyment-0.3.3.tar.gz", hash = "sha256:951a4c52d6791ccec55bc739811169eed69917d3874f5fe722866623a697f39d", size = 21003 }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/52/01/810e174c28a7dcf5f91c048faf69c84eafee60c9a844e4ce21671b2e99bb/Pyment-0.3.3-py2.py3-none-any.whl", hash = "sha256:a0c6ec59d06d24aeec3eaecb22115d0dc95d09e14209b2df838381fdf47a78cc", size = 21924 },
+]
+
 [[package]]
 name = "svg-py"
 version = "1.5.0"
@@ -62,3 +56,20 @@ sdist = { url = "https://files.pythonhosted.org/packages/b9/6d/4680d284924d66082
 wheels = [
     { url = "https://files.pythonhosted.org/packages/51/2b/a541bed029de9ac6a558d3eeeeb0fff5046687651e61d38df3dc43f48e2a/svg_py-1.5.0-py3-none-any.whl", hash = "sha256:5c467efd5a43e8df4dd6f6d078063f195a04966721d36c43d62f5d7529f908d1", size = 13443 },
 ]
+
+[[package]]
+name = "vectise"
+version = "0.1.0"
+source = { virtual = "." }
+dependencies = [
+    { name = "numpy" },
+    { name = "pyment" },
+    { name = "svg-py" },
+]
+
+[package.metadata]
+requires-dist = [
+    { name = "numpy", specifier = ">=2.1.3" },
+    { name = "pyment", specifier = ">=0.3.3" },
+    { name = "svg-py", specifier = ">=1.5.0" },
+]