110 lines
3.2 KiB
Python
110 lines
3.2 KiB
Python
"""CBC example using the Iris dataset."""
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import numpy as np
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import pytorch_lightning as pl
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import torch
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from matplotlib import pyplot as plt
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from prototorch.components import initializers as cinit
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from prototorch.datasets.abstract import NumpyDataset
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from sklearn.datasets import load_iris
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from torch.utils.data import DataLoader
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from prototorch.models.cbc import CBC, euclidean_similarity
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class VisualizationCallback(pl.Callback):
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def __init__(
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self,
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x_train,
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y_train,
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prototype_model=True,
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title="Prototype Visualization",
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cmap="viridis",
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):
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super().__init__()
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self.x_train = x_train
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self.y_train = y_train
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self.title = title
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self.fig = plt.figure(self.title)
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self.cmap = cmap
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self.prototype_model = prototype_model
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def on_epoch_end(self, trainer, pl_module):
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if self.prototype_model:
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protos = pl_module.components
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color = pl_module.prototype_labels
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else:
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protos = pl_module.components
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color = "k"
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ax = self.fig.gca()
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ax.cla()
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ax.set_title(self.title)
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ax.set_xlabel("Data dimension 1")
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ax.set_ylabel("Data dimension 2")
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ax.scatter(x_train[:, 0], x_train[:, 1], c=y_train, edgecolor="k")
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ax.scatter(
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protos[:, 0],
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protos[:, 1],
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c=color,
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cmap=self.cmap,
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edgecolor="k",
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marker="D",
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s=50,
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)
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x = np.vstack((x_train, protos))
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x_min, x_max = x[:, 0].min() - 1, x[:, 0].max() + 1
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y_min, y_max = x[:, 1].min() - 1, x[:, 1].max() + 1
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xx, yy = np.meshgrid(np.arange(x_min, x_max, 1 / 50),
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np.arange(y_min, y_max, 1 / 50))
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mesh_input = np.c_[xx.ravel(), yy.ravel()]
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y_pred = pl_module.predict(torch.Tensor(mesh_input))
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y_pred = y_pred.reshape(xx.shape)
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ax.contourf(xx, yy, y_pred, cmap=self.cmap, alpha=0.35)
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ax.set_xlim(left=x_min + 0, right=x_max - 0)
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ax.set_ylim(bottom=y_min + 0, top=y_max - 0)
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plt.pause(0.1)
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if __name__ == "__main__":
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# Dataset
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x_train, y_train = load_iris(return_X_y=True)
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x_train = x_train[:, [0, 2]]
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train_ds = NumpyDataset(x_train, y_train)
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# Dataloaders
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train_loader = DataLoader(train_ds, num_workers=0, batch_size=150)
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# Hyperparameters
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hparams = dict(
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input_dim=x_train.shape[1],
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nclasses=len(np.unique(y_train)),
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num_components=9,
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component_initializer=cinit.StratifiedMeanInitializer(
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torch.Tensor(x_train), torch.Tensor(y_train)),
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lr=0.01,
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)
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# Initialize the model
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model = CBC(
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hparams,
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data=[x_train, y_train],
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similarity=euclidean_similarity,
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)
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# Callbacks
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dvis = VisualizationCallback(x_train,
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y_train,
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prototype_model=False,
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title="CBC Iris Example")
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# Setup trainer
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trainer = pl.Trainer(
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max_epochs=50,
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callbacks=[
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dvis,
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],
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)
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# Training loop
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trainer.fit(model, train_loader) |