Alexander Engelsberger
7b9b767113
fix: training loss is a zero dimensional tensor
...
Should fix the problem with EarlyStopping callback.
2021-06-25 17:07:06 +02:00
Jensun Ravichandran
72af03b991
refactor: use LinearTransform
instead of torch.nn.Linear
2021-06-25 17:07:06 +02:00
Alexander Engelsberger
71602bf38a
build: bump version 0.1.8 → 0.2.0
2021-06-21 16:47:17 +02:00
Jensun Ravichandran
d42693a441
refactor(api)!: merge the new api changes into dev
2021-06-20 19:00:12 +02:00
Jensun Ravichandran
e5ac50c9a7
Bump version: 0.1.7 → 0.1.8
2021-06-20 17:56:21 +02:00
Jensun Ravichandran
b9eb88a602
Remove .swp
file
2021-06-18 13:46:08 +02:00
Jensun Ravichandran
7eb496110f
Use mesh2d
from prototorch.utils
2021-06-18 13:43:44 +02:00
danielstaps
0a2da9ae50
Added Vis for GMLVQ with more then 2 dims using PCA ( #11 )
...
* Added Vis for GMLVQ with more then 2 dims using PCA
* Added initialization possibility to GMlVQ with PCA and one example with omega init + PCA vis of 3 dims
* test(githooks): Add githooks for automatic commit checks
Co-authored-by: staps@hs-mittweida.de <staps@hs-mittweida.de>
Co-authored-by: Alexander Engelsberger <alexanderengelsberger@gmail.com>
2021-06-18 13:28:11 +02:00
Alexander Engelsberger
8956ee75ad
test(githooks): Add githooks for automatic commit checks
2021-06-16 16:16:34 +02:00
Jensun Ravichandran
a37095409b
[BUGFIX] examples/cbc_iris.py
works again
2021-06-15 15:59:47 +02:00
Jensun Ravichandran
1b420c1f6b
[BUG] LVQ1 is broken
2021-06-14 21:08:05 +02:00
Jensun Ravichandran
a44219ee47
[BUG] PLVQ seems broken
2021-06-14 20:56:38 +02:00
Jensun Ravichandran
1c658cdc1b
[FEATURE] Add warm-starting example
2021-06-14 20:42:57 +02:00
Jensun Ravichandran
6197d7d5d6
[BUGFIX] examples/dynamic_pruning.py
works again
2021-06-14 20:31:39 +02:00
Jensun Ravichandran
d2856383e2
[BUGFIX] examples/gng_iris.py
works again
2021-06-14 20:29:31 +02:00
Jensun Ravichandran
3afced8662
[BUGFIX] examples/glvq_spiral.py
works again
2021-06-14 20:19:08 +02:00
Jensun Ravichandran
68034d56f6
[BUGFIX] examples/glvq_iris.py
works again
2021-06-14 20:13:25 +02:00
Jensun Ravichandran
97ec15b76a
[BUGFIX] KNN works again
2021-06-14 20:09:41 +02:00
Jensun Ravichandran
69e5ff3243
Import from the newly cleaned-up prototorch namespace
2021-06-14 20:08:08 +02:00
Alexander Engelsberger
c87ed5ba8b
[FEATURE] Add PLVQ model
2021-06-12 13:02:26 +02:00
Alexander Engelsberger
fc11d78b38
[REFACTOR] Rename LikelihoodRatioLVQ to SLVQ
2021-06-12 13:02:26 +02:00
Jensun Ravichandran
e62a8e6582
[BUGFIX] Log loss in NG and GNG
2021-06-11 18:50:14 +02:00
Jensun Ravichandran
57f8bec270
Update SOM
2021-06-09 18:21:12 +02:00
Jensun Ravichandran
022d791ea5
Route initialized prototypes
2021-06-07 21:18:08 +02:00
Alexander Engelsberger
43fc7d1678
[QA] Remove unused argument from CBC
2021-06-07 21:00:58 +02:00
Jensun Ravichandran
c7b5c88776
[WIP] Add SOM
2021-06-07 18:44:15 +02:00
Jensun Ravichandran
b031382072
Update NG
2021-06-07 18:35:08 +02:00
Jensun Ravichandran
d558fa6a4a
[REFACTOR] Clean up GLVQ-types
2021-06-07 17:00:38 +02:00
Jensun Ravichandran
34ffeb95bc
Update how the model is printed
2021-06-07 16:58:00 +02:00
Jensun Ravichandran
bed753a6e9
Minor aesthetic change
2021-06-05 01:23:58 +02:00
Jensun Ravichandran
016fcb4060
[REFACTOR] Major cleanup
2021-06-04 22:20:32 +02:00
Jensun Ravichandran
20471bfb1c
[FEATURE] Update pruning callback to re-add pruned prototypes
2021-06-04 15:56:46 +02:00
Jensun Ravichandran
42d974e08c
No implicit learning rate scheduling
2021-06-04 15:55:06 +02:00
Alexander Engelsberger
47db1965ee
[BUGFIX] GNG Example
2021-06-03 15:42:54 +02:00
Alexander Engelsberger
0bc385fe7b
[BUGFIX] Neural Gas gets prototype intiailizer from kwargs
2021-06-03 15:24:17 +02:00
Alexander Engelsberger
358f27257d
[REFACTOR] Remove prototype_initializer function from GLVQ
...
Fixes #9
2021-06-03 15:15:22 +02:00
Alexander Engelsberger
bda88149d4
[BUGFIX] Growing neural gas
2021-06-03 15:13:38 +02:00
Alexander Engelsberger
7379c61966
[BUGFIX] Fix image visualization for some parameter combination
...
image visualization was broken if add_embeding was False, but data visualization was on.
2021-06-03 15:12:51 +02:00
Alexander Engelsberger
e209bf73d5
[BUGFIX] Pruning example works on GPU now
2021-06-03 14:35:24 +02:00
Alexander Engelsberger
1b09b1d57b
[BUGFIX] Probabilistic Models work on GPU now
2021-06-03 14:05:44 +02:00
Alexander Engelsberger
459f7c24be
[REFACTOR] Probabilistic loss signs changed
2021-06-03 14:00:47 +02:00
Alexander Engelsberger
3b02d99ebe
[BUGFIX] Early stopping example works now
2021-06-03 13:38:16 +02:00
Jensun Ravichandran
ef6bcc1079
[BUG] Early stopping does not seem to work
...
The early stopping callback does not work as expected, and crashes at the end of
max_epochs with:
```
~/miniconda3/envs/py38/lib/python3.8/site-packages/pytorch_lightning/trainer/callback_hook.py in on_train_end(self)
155 """Called when the train ends."""
156 for callback in self.callbacks:
--> 157 callback.on_train_end(self, self.lightning_module)
158
159 def on_pretrain_routine_start(self) -> None:
~/work/repos/prototorch_models/prototorch/models/callbacks.py in on_train_end(self, trainer, pl_module)
18 def on_train_end(self, trainer, pl_module):
19 # instead, do it at the end of training loop
---> 20 self._run_early_stopping_check(trainer, pl_module)
21
22
TypeError: _run_early_stopping_check() takes 2 positional arguments but 3 were given
```
2021-06-02 12:44:34 +02:00
Jensun Ravichandran
8851d1bbc9
[FEATURE] Add PruneLoserPrototypes Callback
2021-06-02 03:52:41 +02:00
Jensun Ravichandran
8f7deb75dd
[FEATURE] Log prototype win ratios over all training batches
2021-06-02 02:32:54 +02:00
Jensun Ravichandran
7743c50725
Tweak repr
2021-06-02 01:07:48 +02:00
Jensun Ravichandran
fcf3a4979c
Remove unused import
2021-06-02 00:49:36 +02:00
Jensun Ravichandran
d46fe4a393
[WIP] Update CBC example
2021-06-02 00:45:33 +02:00
Jensun Ravichandran
88cfd5762e
Remove unused imports in models/cbc.py
2021-06-02 00:44:35 +02:00
Jensun Ravichandran
aa42b9e331
[BUGFIX] Import missing module
...
models/unsupervised.py uses `pt` in line 37, but `pt` is undefined in the file.
I wonder why Python doesn't complain about this. Perhaps because unsupervised.py
is never run in isolation and `pt` is otherwise available in the namespace of
the example scripts that use unsupervised.py.
2021-06-02 00:31:57 +02:00
Jensun Ravichandran
91b57b01b1
[REFACTOR] neighbour
-> neighbor
2021-06-02 00:29:45 +02:00
Jensun Ravichandran
98c198d463
[REFACTOR] Use LambdaLayer instead of EuclideanDistance
2021-06-02 00:21:11 +02:00
Jensun Ravichandran
757f4e980d
Add Local-Matrix LVQ
...
Also remove the use of `self.distance_fn` in favor of `self.distance_layer`.
2021-06-01 23:44:16 +02:00
Jensun Ravichandran
5ec2dd47cd
Remove unused import
2021-06-01 23:40:56 +02:00
Jensun Ravichandran
e8cd4d765c
Remove unused variable
2021-06-01 23:39:39 +02:00
Jensun Ravichandran
8403b01081
Move CELVQ to probabilistic.py
2021-06-01 23:39:06 +02:00
Jensun Ravichandran
aff6aedd60
Use the add_components
API for adding prototypes
2021-06-01 23:37:45 +02:00
Jensun Ravichandran
1b6843dbbb
Remove unused imports
2021-06-01 19:31:03 +02:00
Jensun Ravichandran
21023a88d7
[BUGFIX] Fix RSLVQ
2021-06-01 17:44:10 +02:00
Alexander Engelsberger
9c1a41997b
[FEATURE] Add Growing Neural Gas
2021-06-01 17:19:43 +02:00
Jensun Ravichandran
1636c84778
Rename rslvq example
2021-05-31 17:56:45 +02:00
Jensun Ravichandran
27eccf44d4
Use LambdaLayer from ProtoTorch
2021-05-31 16:53:04 +02:00
Alexander Engelsberger
2a218c0ede
Add example for dynamic components in callbacks
2021-05-31 11:39:24 +02:00
Alexander Engelsberger
db064b5af1
Improvement of model __repr__
2021-05-31 11:19:06 +02:00
Alexander Engelsberger
0ac4ced85d
[refactor] Use functional variant of accuracy
...
Prevents Accuracy in `__repr__` of the models.
2021-05-31 11:12:27 +02:00
Jensun Ravichandran
7b7bc3693d
Merge branch 'dev' of github.com:si-cim/prototorch_models into dev
2021-05-31 00:32:49 +02:00
Jensun Ravichandran
cd73f6c427
Add examples/dynamic_components.py
2021-05-31 00:32:27 +02:00
Alexander Engelsberger
a60337ff27
[refactor] Move probabilistic to Prototorch
2021-05-28 20:39:32 +02:00
Alexander Engelsberger
e3392ee952
[refactor] DRY Probabilistic models
2021-05-28 17:13:06 +02:00
Alexander Engelsberger
dade502686
Add MNIST datamodule and training mixin factory.
2021-05-28 16:33:31 +02:00
Jensun Ravichandran
b7edee02c3
[WIP] Add CELVQ
...
TODO Ensure that the distances/probs corresponding to the plabels are sorted
like the target labels.
2021-05-27 17:40:16 +02:00
Alexander Engelsberger
66e3e51a52
Add references to the documentation.
2021-05-26 21:20:17 +02:00
Jensun Ravichandran
d411e52be4
Refactor non-gradient-lvq models into lvq.py
2021-05-25 20:37:34 +02:00
Alexander Engelsberger
32d6f95db0
Add RSLVQ and LikelihoodLVQ
2021-05-25 20:26:15 +02:00
Jensun Ravichandran
139109804f
[BUGFIX] Use _forward
in LVQ1 and LVQ21
2021-05-25 17:43:37 +02:00
Alexander Engelsberger
72e064338c
Use 'num_' in all variable names
2021-05-25 15:41:10 +02:00
Alexander Engelsberger
8ce18f83ce
Add prototype_initializer function to GLVQ
...
This allows overwriting it inside subclasses.
2021-05-21 17:13:10 +02:00
Alexander Engelsberger
7b4f7d84e0
Update Documentation
...
Clean up project
2021-05-21 15:42:45 +02:00
Jensun Ravichandran
a5e086ce0d
Refactor code
2021-05-21 13:33:57 +02:00
Jensun Ravichandran
0611f81aba
Update models namespace
2021-05-21 13:11:59 +02:00
Jensun Ravichandran
a9382dcd9b
Add get_prototype_grid method
2021-05-21 13:11:48 +02:00
Jensun Ravichandran
0933a88a1b
Fix ImageCBC bug
2021-05-21 13:11:36 +02:00
Jensun Ravichandran
88a34a06ef
[WIP] Update CBC implementation to use SiameseGLVQ
2021-05-20 17:36:00 +02:00
Jensun Ravichandran
de63eaf15a
Fix numpy issue in vis.py
2021-05-20 17:33:19 +02:00
Jensun Ravichandran
16dc3cf4eb
Update image visualization
2021-05-20 16:07:16 +02:00
Jensun Ravichandran
df061cc2ff
Refactor code
2021-05-20 14:40:02 +02:00
Alexander Engelsberger
969fb34cc3
Accumulate test loss
2021-05-20 14:20:23 +02:00
Alexander Engelsberger
0204f5eab6
Log test accuracy.
2021-05-20 14:03:31 +02:00
Alexander Engelsberger
b7fc5df386
Log test loss.
2021-05-20 13:47:20 +02:00
Alexander Engelsberger
faf1a88f99
[Bugfix] Remove optimzer_idx from validation and test.
2021-05-20 13:17:27 +02:00
Jensun Ravichandran
5ffbd43a7c
Refactor into shared_step
2021-05-19 16:57:51 +02:00
Jensun Ravichandran
fdf9443a2c
Add validation and test logic
2021-05-19 16:30:19 +02:00
Jensun Ravichandran
eefec19c9b
Custom non-gradient training
2021-05-18 19:49:16 +02:00
Jensun Ravichandran
4957e821f6
Close matplotlib figure on train end
2021-05-18 10:13:22 +02:00
Jensun Ravichandran
81346785bd
Cleanup models
...
Siamese architectures no longer accept a `backbone_module`. They have to be
initialized with an pre-initialized backbone object instead. This is so that the
visualization callbacks could use the very same object for visualization
purposes. Also, there's no longer a dependent copy of the backbone. It is
managed simply with `requires_grad` instead.
2021-05-17 17:00:23 +02:00
Jensun Ravichandran
7a87636ad7
Update KNN
2021-05-17 16:59:35 +02:00
Jensun Ravichandran
77b7b59bad
Clean visualization callbacks
2021-05-17 16:59:22 +02:00
Jensun Ravichandran
6e7d80be88
[BUGFIX] Fix siamese visualization callback
2021-05-15 12:52:44 +02:00
Jensun Ravichandran
b7684ae512
predict_latent
no longer returns numpy
2021-05-15 12:52:16 +02:00
Alexander Engelsberger
0eac2ce326
Examples use GPUs if available.
2021-05-13 15:22:01 +02:00