"""ProtoTorch LGMLVQ example using 2D Iris data.""" import numpy as np import torch from matplotlib import pyplot as plt from prototorch.components import LabeledComponents, StratifiedMeanInitializer from prototorch.functions.competitions import stratified_min from prototorch.functions.distances import lomega_distance from prototorch.modules.losses import GLVQLoss from sklearn.datasets import load_iris from sklearn.metrics import accuracy_score # Prepare training data x_train, y_train = load_iris(True) x_train = x_train[:, [0, 2]] # Define the model class Model(torch.nn.Module): def __init__(self): """Local-GMLVQ model.""" super().__init__() prototype_initializer = StratifiedMeanInitializer([x_train, y_train]) prototype_distribution = [1, 2, 2] self.proto_layer = LabeledComponents( prototype_distribution, prototype_initializer, ) omegas = torch.eye(2, 2).repeat(5, 1, 1) self.omegas = torch.nn.Parameter(omegas) def forward(self, x): protos, plabels = self.proto_layer() omegas = self.omegas dis = lomega_distance(x, protos, omegas) return dis, plabels # Build the model model = Model() # Optimize using Adam optimizer from `torch.optim` optimizer = torch.optim.Adam(model.parameters(), lr=0.01) criterion = GLVQLoss(squashing="sigmoid_beta", beta=10) x_in = torch.Tensor(x_train) y_in = torch.Tensor(y_train) # Training loop title = "Prototype Visualization" fig = plt.figure(title) for epoch in range(100): # Compute loss dis, plabels = model(x_in) loss = criterion([dis, plabels], y_in) y_pred = np.argmin(stratified_min(dis, plabels).detach().numpy(), axis=1) acc = accuracy_score(y_train, y_pred) log_string = f"Epoch: {epoch + 1:03d} Loss: {loss.item():05.02f} " log_string += f"Acc: {acc * 100:05.02f}%" print(log_string) # Take a gradient descent step optimizer.zero_grad() loss.backward() optimizer.step() # Get the prototypes form the model protos = model.proto_layer.components.numpy() # Visualize the data and the prototypes ax = fig.gca() ax.cla() ax.set_title(title) ax.set_xlabel("Data dimension 1") ax.set_ylabel("Data dimension 2") cmap = "viridis" ax.scatter(x_train[:, 0], x_train[:, 1], c=y_train, edgecolor="k") ax.scatter( protos[:, 0], protos[:, 1], c=plabels, cmap=cmap, edgecolor="k", marker="D", s=50, ) # Paint decision regions x = np.vstack((x_train, protos)) x_min, x_max = x[:, 0].min() - 1, x[:, 0].max() + 1 y_min, y_max = x[:, 1].min() - 1, x[:, 1].max() + 1 xx, yy = np.meshgrid(np.arange(x_min, x_max, 1 / 50), np.arange(y_min, y_max, 1 / 50)) mesh_input = np.c_[xx.ravel(), yy.ravel()] d, plabels = model(torch.Tensor(mesh_input)) y_pred = np.argmin(stratified_min(d, plabels).detach().numpy(), axis=1) y_pred = y_pred.reshape(xx.shape) # Plot voronoi regions ax.contourf(xx, yy, y_pred, cmap=cmap, alpha=0.35) ax.set_xlim(left=x_min + 0, right=x_max - 0) ax.set_ylim(bottom=y_min + 0, top=y_max - 0) plt.pause(0.1)